PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07663A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 326aa    MW: 35021.8 Da    PI: 5.9828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07663AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.7e-112512911055
                                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                rrRR+riN+++  L++l+P+      +K++ +++Le+Av+Y++ Lq
  Oropetium_20150105_07663A 251 RRRRERINERLKILQKLVPNG-----TKVDISTMLEEAVQYVRFLQ 291
                                9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.05E-14240307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.491241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13246304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-12247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-8251291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSQTEVLHWC SAYHAAPPAD EESEIVAQFL AAPYPYQNDK DQDQRQLVGD VRASSAYWPE  60
DHVTDPGAGA GACYYWPSNN ADSSSNDGSG GGYVDDGGLY YYLGEPDVSL GINTRTTTLP  120
PCASIDLNLL GDGDEERSAR VPPNPSPADH IRLGHLDGGN NDGAAVPRAK RKVPAGGRDG  180
GDLGGHKKKE KKASTSKTAA QKCVQEKAQS SSSCSGNEST NCSEAQVGRV SAVKARASKG  240
SATDPQSLYA RRRRERINER LKILQKLVPN GTKVDISTML EEAVQYVRFL QLQIKMLSSD  300
EMWMYAPIAY NGMSLGIDLK ISPPQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169191KRKVPAGGRDGGDLGGHKKKEKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07663A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704353.11e-114transcription factor bHLH85
TrEMBLK4ALE01e-113K4ALE0_SETIT; Uncharacterized protein
STRINGSi039720m1e-114(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144452123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-41bHLH family protein