PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07680A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 238aa    MW: 24905 Da    PI: 6.5833
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07680AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like30.76.8e-101203655
                    G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                               m+vk+Ltl+hvkSHLQ+YR+
  Oropetium_20150105_07680A  1 MNVKDLTLAHVKSHLQMYRT 20
                               9******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-8121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MNVKDLTLAH VKSHLQMYRT VKSTDRSPHI TTGEALLEPQ QRTATGMMKL VAVEAAAAAE  60
GRGSLVPAVV LPTCDNMVGS PAAAAATTSA AHFICAPLQA SPPPPPMHQR RTTDLTAAAL  120
EKGVAIVDPS LHRSQKHNYS SPGEVQQDPS RQQAAAAHQE EVNGHTAAVV GLHASVEAAV  180
AATNISSPAS SSSPSLASLD LLTTDDMYAP NLEISLGRQD WNNMAAHAEE LSLLKYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07680A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393441.14e-41probable transcription factor GLK2
TrEMBLA0A3L6SBG03e-40A0A3L6SBG0_PANMI; Putative transcription factor RL9
STRINGORUFI03G36810.14e-40(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65543750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.24e-10G2-like family protein