PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07703A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 242aa    MW: 26370.1 Da    PI: 11.6923
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07703AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.68.3e-111181611154
                                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1  11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                                 +NR++A+rsR+RK++++eeL++ ++ L ae + L+ +l+ l  
  Oropetium_20150105_07703A 118 XSNRLSAQRSRARKQQRLEELRTTAARLRAEKDGLAARLQALAR 161
                                59*************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS502178.864110173IPR004827Basic-leucine zipper domain
SMARTSM003381.7E-4111172IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.06E-7117161No hitNo description
Gene3DG3DSA:1.20.5.1703.2E-7119161No hitNo description
PfamPF077161.6E-4119160IPR004827Basic-leucine zipper domain
CDDcd147022.98E-10119162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSPPCKMMMM AARAAAVASS PRAANGHEAL GLDLLALPSS SLSCGGARGD QQGDVITSGL  60
FTPWGPESCP SLDQVMXXXX XXXXXXXXXX XXXXXXYGRD AGADEXXXXX XXXXXXXXSN  120
RLSAQRSRAR KQQRLEELRT TAARLRAEKD GLAARLQALA RHGLAVRCQN ARLRAEAHAL  180
SRRVREARRI LALQQRLARF VPSPMLMPMP MRMPQEQHHH HQPAGGATPA VGLASSSLMM  240
T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07703A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9576761e-63EU957676.1 Zea mays clone 1603335 ocs element-binding factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466386.18e-42DNA-binding protein EMBP-1
TrEMBLC5WZ822e-40C5WZ82_SORBI; Uncharacterized protein
STRINGSb01g006850.13e-41(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138452429