PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_07750A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 160aa MW: 17827.5 Da PI: 10.1213

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_07750A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	124.5	8.9e-39	16	127	21	128
NAM 21 kkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgel 99 kv++k+l++ e+ike+diyk++PwdLpk +v ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+ +g Oropetium_20150105_07750A 16 DKVARKPLSI-EIIKEMDIYKHDPWDLPKasTVGGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSAtnnSGDS 98 5888999999.89*************5347777999**********************************97666677 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lv+y+g+a kg+ktdW+mhe+rl Oropetium_20150105_07750A 99 IGLKKSLVYYRGSAGKGTKTDWMMHEFRL 127 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.051	1	154	IPR003441	NAC domain
SuperFamily	SSF101941	6.54E-40	16	132	IPR003441	NAC domain
Pfam	PF02365	8.8E-14	38	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MVFKEFAREE GVISLDKVAR KPLSIEIIKE MDIYKHDPWD LPKASTVGGG EKEWYFFCLR 60 GRKYRNSIRP NRVTGSGFWK ATGIDRPIYS ATNNSGDSIG LKKSLVYYRG SAGKGTKTDW 120 MMHEFRLPPA AAAAITYASP SMQEAVSSNK LVFVTVHSI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-35	17	127	38	142	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-35	17	127	38	142	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-35	17	127	38	142	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-35	17	127	38	142	NO APICAL MERISTEM PROTEIN
3swm_A	1e-35	17	127	41	145	NAC domain-containing protein 19
3swm_B	1e-35	17	127	41	145	NAC domain-containing protein 19
3swm_C	1e-35	17	127	41	145	NAC domain-containing protein 19
3swm_D	1e-35	17	127	41	145	NAC domain-containing protein 19
3swp_A	1e-35	17	127	41	145	NAC domain-containing protein 19
3swp_B	1e-35	17	127	41	145	NAC domain-containing protein 19
3swp_C	1e-35	17	127	41	145	NAC domain-containing protein 19
3swp_D	1e-35	17	127	41	145	NAC domain-containing protein 19
4dul_A	1e-35	17	127	38	142	NAC domain-containing protein 19
4dul_B	1e-35	17	127	38	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_07750A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981565.1	4e-78	transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	7e-58	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A3L6TSA4	3e-80	A0A3L6TSA4_PANMI; Transcription factor JUNGBRUNNEN 1
STRING	Pavir.J03639.1.p	2e-79	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	1e-58	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_07750A

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]