PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_07774A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 363aa MW: 39534.9 Da PI: 6.2326

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_07774A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.3	6.4e-14	178	218	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rRRdriN+++ L+el+P++ K +Ka+iL +++eY+ksLq Oropetium_20150105_07774A 178 QRRRDRINEKMRALQELIPHC-----NKTDKASILDETIEYLKSLQ 218 8*****************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.843	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-12	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-16	177	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-17	178	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-11	178	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.94E-14	178	222	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MLPSLISTSR LYLVSLFLFS SRRKGSTSIH PPLCCFRSKN RDDDMDGNAR SVANQKKPII 60 GEDDDLLELL WHNGSVVAQP QAHQRAPALS DRPGSTSGLS GEETAAWFPD TLDDALEKDL 120 YTQLWYSSIT DAATQPGDAF PGPSSQPLPD PAKPPMGSGV ESSSAGGGMC STFCGSNQRR 180 RDRINEKMRA LQELIPHCNK TDKASILDET IEYLKSLQMQ LQIMWMTSGM TPIMFPAAHQ 240 FVPPMALGMN SACIPSAQGL GQIPRVPYMN MNHPLPNHIP LHSSPAMSRI NPLNVANQMQ 300 NIHLREINNR FLYPDSEQTA VPQVPGPYAY GQAAQPSRTL DIPASTVVPT STVGLPPAYD 360 EV*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MLPSLISTSR LYLVSLFLFS SRRKGSTSIH PPLCCFRSKN RDDDMDGNAR SVANQKKPII  60
GEDDDLLELL WHNGSVVAQP QAHQRAPALS DRPGSTSGLS GEETAAWFPD TLDDALEKDL  120
YTQLWYSSIT DAATQPGDAF PGPSSQPLPD PAKPPMGSGV ESSSAGGGMC STFCGSNQRR  180
RDRINEKMRA LQELIPHCNK TDKASILDET IEYLKSLQMQ LQIMWMTSGM TPIMFPAAHQ  240
FVPPMALGMN SACIPSAQGL GQIPRVPYMN MNHPLPNHIP LHSSPAMSRI NPLNVANQMQ  300
NIHLREINNR FLYPDSEQTA VPQVPGPYAY GQAAQPSRTL DIPASTVVPT STVGLPPAYD  360
EV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_07774A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466350.1	1e-90	transcription factor PIF5 isoform X2
Refseq	XP_012704122.1	1e-90	transcription factor PIF4 isoform X2
Swissprot	Q10CH5	1e-83	PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBL	A0A3B6LU86	6e-98	A0A3B6LU86_WHEAT; Uncharacterized protein
STRING	Sb01g006190.1	6e-90	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3174	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59060.1	8e-27	phytochrome interacting factor 3-like 6

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_07774A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Todaka D, et al. Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]