PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_07818A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

LBD

Protein Properties

Length: 128aa MW: 13757.6 Da PI: 6.4911

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_07818A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	61.7	2e-19	19	75	1	57
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeereda 57 +CaaCk +rrkC++dC+lapyfp ++p+++a+v+++FGasn+ ++l+ + + +++ Oropetium_20150105_07818A 19 RCAACKNQRRKCSHDCALAPYFPVTDPQRYACVQRIFGASNIARVLQPAAAADTHQL 75 6*********************************************98877666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.886	18	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-18	19	76	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MSSMSATSTE AAAANPSRRC AACKNQRRKC SHDCALAPYF PVTDPQRYAC VQRIFGASNI 60 ARVLQPAAAA DTHQLLNAQV QAPPPPQQQL AGNALMMVVH EPFQELDTLL LDDVHAADNL 120 FVDDKIV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_07818A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466327.1	1e-29	LOB domain-containing protein 24
TrEMBL	C5WY44	2e-28	C5WY44_SORBI; Uncharacterized protein
STRING	Sb01g005700.1	4e-29	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19720	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-14	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_07818A