PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08159A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 739aa    MW: 80746.6 Da    PI: 5.4691
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08159AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.6e-06513537125
                                --S---SGGGGTS--TTTTT-SS-S CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                                +++ +C+f +++G Ck+ ++C++ H
  Oropetium_20150105_08159A 513 PGRQECPFLLKYGNCKFASSCQYYH 537
                                57899******************** PP
2zf-CCCH37.24.8e-12566590327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                 ++C+f+++tG Ck+G  CkF+H++
  Oropetium_20150105_08159A 566 APECPFYMKTGACKFGTECKFHHPK 590
                                589********************96 PP
3zf-CCCH20.67.8e-07631657127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                +++++Cr+++++G Ck+ + C F+H++
  Oropetium_20150105_08159A 631 PGQPECRYYMQFGKCKFLSACIFHHPR 657
                                5789*********************96 PP
4zf-CCCH352.4e-11665686526
                                --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                +C+f+++tGtC++G+ C F+H+
  Oropetium_20150105_08159A 665 ECPFYMKTGTCQFGSACEFNHS 686
                                6********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.028512540IPR000571Zinc finger, CCCH-type
SMARTSM003560.58512539IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-7563590IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.469563591IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9566590IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5567591IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4569590IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.441630658IPR000571Zinc finger, CCCH-type
SMARTSM003560.029630657IPR000571Zinc finger, CCCH-type
SMARTSM003560.004661687IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-5665686IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.023665688IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-9665686IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001666686IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.108705733IPR000571Zinc finger, CCCH-type
SMARTSM003560.76705732IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MAPSDGLPEM PLPVRDSSPP CDPLPTPSHP CDHATVTASL LAISPQDEAD ADLAPERLSG  60
ELSSLPHEGH GDAPPAGEEA GLCVTGASGT DAPVAAAVSP LQVKAKQEVS SFPSEQGNCE  120
VAEQLKAKPE VSSFPSEQGN REVAVQLKAN SEVSSFPSEQ GNHEVAVQLE AKPEVSSFPS  180
EQGNCEVAVQ LKAMSEVSSF PSEQGNREVA VQLKAKSEVS SFSSEQGNRE VAVQLKANPE  240
VSSFPSDQGN REVAGQLKAN LEVSSFPSEQ GNCEVAVQLK ANPEVSTFPS DQGNREVAGQ  300
HHEANPEVSS FPSEQGNPEV AVQHHEANPE VSSFPSEHGN PEVAVQLKAK PEPQVSSCPS  360
EQGNHEVAVQ LKANPKVSSF PSKQGNHEVA QILELNRVGL PIRELYKPTG WDDTNLPSSP  420
HLKKSSSPHS KKSSEHATLD DISSSSEILP PNILRMLLPP QTLPPGSEAK EMKVKKDPDW  480
SSASDDSDSC CSADSSDGPL CKQEHHVDYP GRPGRQECPF LLKYGNCKFA SSCQYYHAND  540
KLVRQYHQKD PSLSEELMVY PDKPGAPECP FYMKTGACKF GTECKFHHPK DLPPSMQGST  600
IPKRPLDPKE IHPETTLQYH MDQQQNYPER PGQPECRYYM QFGKCKFLSA CIFHHPRDRV  660
RSILECPFYM KTGTCQFGSA CEFNHSGKGG EIDDRTEYGH NYPKRPGGNE CFHYMEHGYC  720
RFQMKCKYHH PTDRLSWK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08159A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020402465.11e-157uncharacterized protein LOC100216738 isoform X2
TrEMBLA0A317Y5T71e-158A0A317Y5T7_MAIZE; Zinc finger CCCH domain-containing protein 8
STRINGGRMZM2G068476_P011e-158(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.16e-38floral homeotic protein (HUA1)