PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08196A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TALE
Protein Properties Length: 246aa    MW: 27536 Da    PI: 7.8344
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08196AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-091812132254
                                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                ++yps +e+ +LA ++gL+ +q+++WF N R +
  Oropetium_20150105_08196A 181 HPYPSDSEKLRLAVRTGLSRSQISNWFINARVR 213
                                89*****************************98 PP
2BELL56.37.8e-193092971
                       BELL  9 kakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71
                               +akLl ll e++ r ++y  +l  v+ssFe + g g+a+ Ytsl ++a++rhF +L+ ai  +
  Oropetium_20150105_08196A 30 QAKLLGLLSELESRQERYFVELGRVASSFEPALGPGAAAAYTSLMSQAMARHFGNLRRAILRR 92
                               69**********************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075264.8E-171689IPR006563POX domain
PROSITE profilePS5007111.645154217IPR001356Homeobox domain
CDDcd000862.54E-10157218No hitNo description
SMARTSM003891.8E-9157221IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-26162223IPR009057Homeodomain-like
SuperFamilySSF466891.8E-17163225IPR009057Homeodomain-like
PfamPF059203.5E-18174213IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MPTTFLLLPE KAQRYAKLHR AAKNDADGVQ AKLLGLLSEL ESRQERYFVE LGRVASSFEP  60
ALGPGAAAAY TSLMSQAMAR HFGNLRRAIL RRLRLLAATT AAARRRRRLF AGADDEDEKE  120
EEEEDDDDDG GPVTDEMVDR VARRTKLAAA ARAEQAWRPL RGLPEGSVAV LRAWLFDHFL  180
HPYPSDSEKL RLAVRTGLSR SQISNWFINA RVRLWKPMIE EMYNQEFSEE FPLSNSNSTS  240
GASSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-16163221563Homeobox protein Meis2
4xrm_B2e-16163221563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08196A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0823966e-81AY082396.1 Zea mays knotted1-interacting protein (kip) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792968.14e-86BEL1-like homeodomain protein 11
TrEMBLA0A2T7C2N21e-85A0A2T7C2N2_9POAL; Uncharacterized protein
STRINGPavir.Ia00979.1.p3e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.12e-36BEL1-like homeodomain 11