PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08220A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HB-other
Protein Properties Length: 200aa    MW: 21383.8 Da    PI: 5.072
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08220AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.83.2e-071251522855
                                HHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                   Homeobox  28 eereeLAkklgLterqVkvWFqNrRake 55 
                                 e++ LA+++gL+ +q+ +WF N+R ++
  Oropetium_20150105_08220A 125 PEKAALAESTGLDAKQINNWFINQRKRH 152
                                68899********************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.3E-1860104IPR005540KNOX1
PfamPF037904.4E-1962102IPR005540KNOX1
CDDcd000866.48E-8110154No hitNo description
Gene3DG3DSA:1.10.10.601.1E-13124156IPR009057Homeodomain-like
SuperFamilySSF466894.28E-9125159IPR009057Homeodomain-like
PfamPF059201.2E-9126151IPR008422Homeobox KN domain
PROSITE profilePS500719.556126155IPR001356Homeobox domain
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEQPLPLLAS TSKSTTTPFS LELDQRATTA SSTAAEVPTP AAAAASDPSR QSNNNEGDSE  60
IIKVNIMSHP LYPALLRAFI DCRKVGAPPE VVGRLSALAG EVDMNSNDRQ EELAKDPELD  120
QFMEPEKAAL AESTGLDAKQ INNWFINQRK RHWKPAPPPA MLAPAADYRG ASSSSANRAA  180
LRAAEGHYFP GGSTYPREP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08220A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0352053e-42BT035205.1 Zea mays full-length cDNA clone ZM_BFb0044N12 mRNA, complete cds.
GenBankBT0406223e-42BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds.
GenBankKJ7275713e-42KJ727571.1 Zea mays clone pUT5431 HB transcription factor (HB110) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001336606.15e-46uncharacterized protein LOC100193050 isoform 2
SwissprotQ75LX72e-34KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A1D6KYU82e-44A0A1D6KYU8_MAIZE; Homeobox protein knotted-1-like 1
TrEMBLA0A317Y5T92e-46A0A317Y5T9_MAIZE; Homeobox protein knotted-1-like 4
TrEMBLB4FU341e-44B4FU34_MAIZE; Uncharacterized protein
STRINGGRMZM2G061101_P012e-45(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-14KNOTTED-like from Arabidopsis thaliana