PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_08274A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

LBD

Protein Properties

Length: 194aa MW: 20537.4 Da PI: 8.282

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_08274A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.6	5.2e-44	21	120	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrr+Ca++Cv+apyfp ++p+kfanvhk+FGasnv+k+l+++p ++r d++sslvyeA+ar+rdPvyG+v+ i++lq Oropetium_20150105_08274A 21 PCAACKLLRRRCAAGCVFAPYFPPAEPHKFANVHKVFGASNVSKMLQEIPVQHRGDTVSSLVYEANARIRDPVYGCVAAISSLQ 104 7********************************************************************************* PP DUF260 85 qqleqlkaelallkee 100 qq+e+l+a+lal+++e Oropetium_20150105_08274A 105 QQVETLQAQLALAQAE 120 **********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.256	20	121	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.9E-44	21	118	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MKDEFAPVAG KAGASSSASA PCAACKLLRR RCAAGCVFAP YFPPAEPHKF ANVHKVFGAS 60 NVSKMLQEIP VQHRGDTVSS LVYEANARIR DPVYGCVAAI SSLQQQVETL QAQLALAQAE 120 MVRLNMNNAY MAHRLKAARG CGGGGSSTNT GSPSSMSSPK TEQPEAHCKA TPALLDMVVD 180 QPYSMDDSQL WSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-49	12	123	2	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-49	12	123	2	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_08274A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT069911	1e-154	BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds.
GenBank	KJ727650	1e-154	KJ727650.1 Zea mays clone pUT5577 LOB transcription factor (LOB19) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466719.1	4e-84	LOB domain-containing protein 4 isoform X1
Swissprot	Q8LBW3	2e-55	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A3L6TSK8	4e-90	A0A3L6TSK8_PANMI; LOB domain-containing protein 4-like
STRING	Sb01g012810.1	1e-83	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	4e-36	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_08274A

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]