PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08278A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 120aa    MW: 13004.5 Da    PI: 9.4586
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08278AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.71e-222584258
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSS...TTEEEEEEES--SS CS
                       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaed...pkvveitYegeHnh 58
                               +Dgy+W+KYGqK +k+ +  rsY++C +++C +kkkve   +d   ++++ ++Yeg H+h
  Oropetium_20150105_08278A 25 EDGYQWKKYGQKFIKNIQKMRSYFKCRHQRCGAKKKVEWHPSDaggGDLIRVVYEGAHQH 84
                               7*************************************9888744469************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-241987IPR003657WRKY domain
PROSITE profilePS5081117.5341987IPR003657WRKY domain
SuperFamilySSF1182907.72E-222087IPR003657WRKY domain
SMARTSM007743.5E-242486IPR003657WRKY domain
PfamPF031063.8E-212584IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MASTSNPDAI GEMTGIANHQ LVMPEDGYQW KKYGQKFIKN IQKMRSYFKC RHQRCGAKKK  60
VEWHPSDAGG GDLIRVVYEG AHQHGSPPPS SASHQQGGGD ANQYELGAQV FGGARSTSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08278A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982253.17e-49probable WRKY transcription factor 33
TrEMBLK4AGJ42e-47K4AGJ4_SETIT; Uncharacterized protein
STRINGSi038001m3e-48(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.12e-18WRKY DNA-binding protein 34