PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_08323A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

YABBY

Protein Properties

Length: 153aa MW: 17812.5 Da PI: 10.1473

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_08323A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	67.4	5.5e-21	41	76	110	149
YABBY 110 prvppvirPPekrqrvPsaynrfikeeiqrikasnPdish 149 +r PekrqrvPsaynrfikeei+rikasnPdis Oropetium_20150105_08323A 41 L----HVRAPEKRQRVPSAYNRFIKEEIRRIKASNPDISX 76 3....389******************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.1E-19	34	75	IPR006780	YABBY protein
SuperFamily	SSF47095	5.68E-5	42	76	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
ESFKAHNXXX XXXXXXXXXX XXXXXXXXXX XXXXXXQDHM LHVRAPEKRQ RVPSAYNRFI 60 KEEIRRIKAS NPDISXXXXX XXXXXXXXXX XXXXXXXPCY HLCNVNWTIR NTSKDWAHFP 120 NIHFGLGPQE NSKKLDEAIG ATARPQKVQG LY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_08323A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795818.1	3e-37	protein YABBY 2-like isoform X2
Refseq	XP_025795820.1	2e-37	protein YABBY 2-like isoform X4
Swissprot	Q10FZ7	1e-33	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A059PZZ7	1e-36	A0A059PZZ7_9POAL; Axial regulator
STRING	Pavir.Ia01130.1.p	2e-36	(Panicum virgatum)
STRING	Si037789m	2e-36	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	9e-20	YABBY family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_08323A