PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_08324A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

YABBY

Protein Properties

Length: 61aa MW: 6703.86 Da PI: 7.5118

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_08324A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	56.6	1.2e-17	14	58	22	66
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldes 66 ++vsvP+++++++vtvrCGhCtsllsvnl+ + q l+++shl+ + Oropetium_20150105_08324A 14 ILVSVPTNTMLNIVTVRCGHCTSLLSVNLRGSIQSLPVQSHLQVD 58 579**************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.9E-14	14	56	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 61 aa Download sequence Send to blast
MQLYPSYVHL LRDILVSVPT NTMLNIVTVR CGHCTSLLSV NLRGSIQSLP VQSHLQVDIE 60 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_08324A

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003561769.1	7e-17	protein YABBY 2
Refseq	XP_004982272.1	8e-17	protein YABBY 2
Swissprot	Q10FZ7	2e-17	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	K4AFY2	5e-16	K4AFY2_SETIT; Uncharacterized protein
TrEMBL	M8A6G1	1e-15	M8A6G1_TRIUA; Protein YABBY 2
STRING	Si037789m	9e-17	(Setaria italica)
STRING	TRIUR3_18590-P1	2e-16	(Triticum urartu)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-10	YABBY family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_08324A