PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08366A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family M-type_MADS
Protein Properties Length: 63aa    MW: 6864.86 Da    PI: 4.3902
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08366AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.66.5e-1320472451
                               HHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF 24 AeELSvLCdaevaviifsstgklyeyss 51
                               A+EL +LCdaev++++fs+ g+lyey+s
  Oropetium_20150105_08366A 20 AFELAILCDAEVSLLVFSPAGELYEYAS 47
                               99************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.7E-7148IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-11649IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-81126IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.8671949IPR002100Transcription factor, MADS-box
PfamPF003191.8E-92045IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-82647IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MARRMPVELR RMEDRTSCQA FELAILCDAE VSLLVFSPAG ELYEYASNRG IAPTAQSSLA  60
VE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08366A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315790.19e-18MADS-box transcription factor 51 isoform X1
TrEMBLA0A453GD064e-17A0A453GD06_AEGTS; Uncharacterized protein
STRINGEMT047245e-17(Aegilops tauschii)
STRINGTraes_3B_DA3217598.16e-18(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.12e-11AGAMOUS-like 14