PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08374A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 571aa    MW: 61234.2 Da    PI: 6.3904
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08374AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.39.9e-172981452
                               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS
                   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrR 52
                                 ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR
  Oropetium_20150105_08374A 29 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRR 81
                               6789************************************************9 PP
2START48.82.1e-16193285125203
                                EEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--...........SSXXHHHHHHHHHHHHHHHHH CS
                      START 125 ivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk...........grlphwllrslvksglaegak 194
                                i+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl+           +++++++lr+l++s  + ++k
  Oropetium_20150105_08374A 193 ICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDvsgtgisysvqAWSVPEVLRPLYESPKIIAQK 276
                                899*****999999899*********************************854444444444489******************* PP

                                HHHHHTXXX CS
                      START 195 twvatlqrq 203
                                ++ a+l++ 
  Oropetium_20150105_08374A 277 MTIAALRHI 285
                                ****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.6042381IPR001356Homeobox domain
SMARTSM003897.7E-112591IPR001356Homeobox domain
SuperFamilySSF466892.82E-142782IPR009057Homeodomain-like
CDDcd000869.70E-152882No hitNo description
PfamPF000462.5E-142981IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-163182IPR009057Homeodomain-like
SuperFamilySSF559612.33E-13135246No hitNo description
PfamPF018521.0E-13193286IPR002913START domain
PROSITE profilePS5084810.661193269IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-6197244IPR023393START-like domain
PfamPF086701.7E-15522569IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MAAMVAAGGG KDRSSPGGGG APQVDTGKYV RYTPEQVEAL ERVYSECPKP SSLRRQQLIR  60
ECPILSNIEP KQIKVWFQNR RCVSEGLFSR SIPSVATTDT SCESVVTSGQ HHQQQNPAAP  120
RPLRDANNPA GLLAIAEETL AEFLSKATGT AVDWVAEILK DRPSWYRDCR CVDVLHVIPT  180
GNGGTIELIY MQICERSLTQ STGGPSGPNT PNFVRAEVLP SGYLIRPCEG GGSMIHIVDH  240
VDLDVSGTGI SYSVQAWSVP EVLRPLYESP KIIAQKMTIA ALRHIRQIAH ESSGEMPYGG  300
GRQPAVLRTF SQRLSRGFND AVNGFPDDGW SLMSSDGAED VTIAINSSPN KLVGSHVNSS  360
QLFSAIGGGI LCAKASMLLQ NVPPALLVRF LREHRSEWAD PGVDAYSAAA LRASPYAVPG  420
LRASGFMGSQ VILPLAHTLE HEEDPPSGTR TLDLASTLEV GSGGTTRASS DASSTSNTRS  480
VLTIAFQFHT GAELLRTETQ CTDSSLKALW QHSDSIMCCS LKGFAYLPGG VCVSSMGRPV  540
SYEQAVAWKV LGDDDAPHCL AFMFVNWSFV *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08374A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605840.0AK060584.1 Oryza sativa Japonica Group cDNA clone:001-023-H08, full insert sequence.
GenBankAK1032840.0AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982339.10.0homeobox-leucine zipper protein HOX32
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1D6KX690.0A0A1D6KX69_MAIZE; Homeobox-leucine zipper protein ATHB-14
STRINGPavir.Ia01087.1.p0.0(Panicum virgatum)
STRINGSi034228m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1849158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]