PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08450A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 314aa    MW: 33953.4 Da    PI: 8.6531
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08450AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.59.2e-11116139225
                    G2-like   2 prlrWtpeLHerFveaveqLGGse 25 
                                pr+rWt+ LH++Fv+ave LGG+e
  Oropetium_20150105_08450A 116 PRMRWTTSLHAHFVHAVELLGGHE 139
                                9*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-8113140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAASAPDLSL NISPPSLPDA RSSCDEGETT CREEETAAEL NDDEEPKLYL GLDTSTDTAN  60
QDTVNSGLQQ QRLHQPAGQI QRFKKVSAGG SSQTLSTGAT RSGNCTGGGK RSSRAPRMRW  120
TTSLHAHFVH AVELLGGHES HLGMTDMSFL RRGFELYGFD AFNHSTYNPT ANARRSSTQH  180
GAAHGFVDHD NARRLHAGHI ETGSSRIRSS WSTGGIVNGR WSSSSSSTAP PYQMMTMNGR  240
TTSSSGGAEQ ARMTMKQQQP QQVLSSSRMP SLEISLGRPG WQQQDTNLQQ QRGVDKKTTA  300
TTTNKELTLL KCL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08450A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982402.12e-54uncharacterized protein LOC101779847
TrEMBLA0A0A9GJU47e-57A0A0A9GJU4_ARUDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.19e-14G2-like family protein