PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08454A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 107aa    MW: 12389.5 Da    PI: 10.3031
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08454AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.38.7e-16361033199
                                .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                         B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                                +++ + ++ +   ++W+ k+ y  ++++ +l +GW +F+++ngL++gD+++F+l ++ ++ +++v++++k
  Oropetium_20150105_08454A  36 AKG-ETMVLQCGRKVWKTKMMYHTGRRW-TLDGGWPQFARENGLRVGDICLFELRKNkRKLTMRVHIISK 103
                                344.455566688*******77776655.79***********************99999999***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010197.9E-48104IPR003340B3 DNA binding domain
SuperFamilySSF1019363.01E-1717103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-1917103IPR015300DNA-binding pseudobarrel domain
CDDcd100174.10E-142799No hitNo description
PfamPF023627.7E-1428103IPR003340B3 DNA binding domain
PROSITE profilePS5086311.36448104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MNSRNWLDDQ KDIEPGSLLC CYSALGSRYA SVHLPAKGET MVLQCGRKVW KTKMMYHTGR  60
RWTLDGGWPQ FARENGLRVG DICLFELRKN KRKLTMRVHI ISKEQF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08454A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685567.12e-36B3 domain-containing protein Os03g0619600-like
RefseqXP_025797619.18e-36B3 domain-containing protein Os03g0619800-like isoform X2
RefseqXP_025797620.14e-36B3 domain-containing protein Os03g0619800-like isoform X3
SwissprotQ6AV221e-17Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A0A9EDT29e-40A0A0A9EDT2_ARUDO; Uncharacterized protein
STRINGSi037821m2e-36(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-08related to vernalization1 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]