PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08478A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 220aa    MW: 23087.8 Da    PI: 8.1021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08478AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000166587123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C+ Cgk F+++  L  H ++H
  Oropetium_20150105_08478A 65 HRCSVCGKAFPSHQALGGHKSSH 87
                               79**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0166587IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.15E-96587No hitNo description
PfamPF139125.2E-116589IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.3626592IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SuperFamilySSF576672.15E-9128155No hitNo description
PfamPF139123.8E-14132157IPR007087Zinc finger, C2H2
SMARTSM003550.12133155IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349133155IPR007087Zinc finger, C2H2
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
EEQDDVGEVQ QQHQAWAKRK RSRRHPRAPT EEEHLALCLL MLARGRRDRD DQTAPPPPPA  60
TQHEHRCSVC GKAFPSHQAL GGHKSSHRAS RPPQANTSAA ALVLPPEDPA TTSASPATSS  120
STTSGTAGGG RVHECSVCKK TFPTGQALGG HKRCHYEGTA AAAVTATARG FDLNVPAALP  180
DIADRCLLLP AAAAAGGEEA DDEVLSPLAF KKPRLMIPA*
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08478A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562286.14e-58zinc finger protein 1
SwissprotQ424301e-46ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0A9AQT58e-67A0A0A9AQT5_ARUDO; Uncharacterized protein
STRINGPavir.J15423.1.p1e-58(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.19e-35C2H2 family protein