PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08481A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LBD
Protein Properties Length: 246aa    MW: 25512.7 Da    PI: 7.3162
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08481AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260958.4e-302105199
                     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 
                                +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ ++  l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g+
  Oropetium_20150105_08481A   2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLQHRPALFRSLLYEACGRTINPVSGAIGL 85 
                                6*********************9999888899**************************************************** PP

                     DUF260  80 ilklqqqleqlkaelallke 99 
                                +++++++l+q++ae++l+++
  Oropetium_20150105_08481A  86 MWTGNWDLCQAAAEAVLRGD 105
                                **************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.881107IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLQHR  60
PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAAEA VLRGDSLRAL SAIPAAFTDR  120
DMAGLYGNVG AAGAASSSSP DHSSSAPPAS RKRKYRKDDD DCHNRHRQNQ QPPPPEAAGL  180
LLQLPSSCEL HLGLTTPASP QARRPLGCGG ASDEYSATTT CEDAAGGDAA EAGGAPPTLL  240
NLFIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150157RKRKYRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08481A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880021e-164AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628211.11e-105LOB domain-containing protein 38
RefseqXP_020177395.11e-105LOB domain-containing protein 39-like
TrEMBLA0A3B6HV181e-105A0A3B6HV18_WHEAT; Uncharacterized protein
STRINGTraes_4AL_7241716B6.11e-105(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-56LOB domain-containing protein 37