PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_08691A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

S1Fa-like

Protein Properties

Length: 136aa MW: 14443 Da PI: 10.3074

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_08691A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	134.2	3.1e-42	66	135	2	70
S1FA 2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +v+++e+ kGlnPG+ivllvv+++ll+f+vgny+lyvyaqk+lPP+kkkPvskkklkreklkqGv++PGe Oropetium_20150105_08691A 66 NVVIEEVsKGLNPGMIVLLVVASFLLLFFVGNYALYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 135 56777877*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	9.0E-8	67	135	No hit	No description
Pfam	PF04689	3.9E-39	71	135	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MAEQFADSAS GVNFGASVLG NVRSSPSGVE GNPGCPSVTL FLPLKLAMLP WEAPAALRSD 60 VTFHNNVVIE EVSKGLNPGM IVLLVVASFL LLFFVGNYAL YVYAQKTLPP KKKKPVSKKK 120 LKREKLKQGV SAPGE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_08691A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633609.1	1e-24	DNA-binding protein S1FA2
Swissprot	Q7XLX6	9e-26	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A1E5V3L5	6e-24	A0A1E5V3L5_9POAL; Uncharacterized protein (Fragment)
TrEMBL	K3Y9Y8	6e-24	K3Y9Y8_SETIT; Uncharacterized protein
STRING	Pavir.Gb01773.1.p	9e-25	(Panicum virgatum)
STRING	Si011030m	1e-24	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5154	35	63

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_08691A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]