PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08796A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family CAMTA
Protein Properties Length: 1012aa    MW: 112836 Da    PI: 5.9177
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08796AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-157.52.8e-182713320117
                       CG-1  20 nfekheltlelktrpksgsli...Lynrkkvryfrk.....DG..yswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                                n+e++ +t e++++p+s ++i   ++  +++ yf++      G  + + ++ +      d ++L vg+v++l+cyYah+e+np 
  Oropetium_20150105_08796A  27 NHERFPITPEPPKKPPSIAYIpqdFFIFQQMPYFKNivpsaGGslFLYNRRVNSTNKLLDTKRL-VGNVDALSCYYAHGEQNPC 109
                                5666666666666666655543333333444455543333222324455555554444455555.9****************** PP

                       CG-1  94 fqrrcywlLeeelekivlvhylev 117
                                fqrrc+w+Le ++e+ivlv+y+ev
  Oropetium_20150105_08796A 110 FQRRCFWMLEPAYEHIVLVQYREV 133
                                **********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143726.0281139IPR005559CG-1 DNA-binding domain
PfamPF038593.8E-1427132IPR005559CG-1 DNA-binding domain
SMARTSM010765.7E-1137134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.5E-6435524IPR013783Immunoglobulin-like fold
PfamPF018331.6E-6435512IPR002909IPT domain
SuperFamilySSF484032.24E-15466510IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.24E-15630727IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.6E-17630725IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.91632724IPR020683Ankyrin repeat-containing domain
CDDcd002041.05E-13637724No hitNo description
PfamPF127966.1E-7648725IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.354665697IPR002110Ankyrin repeat
SMARTSM002481.4E-4665694IPR002110Ankyrin repeat
SMARTSM002483400704733IPR002110Ankyrin repeat
SMARTSM0001527785807IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.529786815IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525406.37E-6843893IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.73846875IPR000048IQ motif, EF-hand binding site
SMARTSM0001523847867IPR000048IQ motif, EF-hand binding site
PfamPF006120.032848866IPR000048IQ motif, EF-hand binding site
SMARTSM000151.7E-6868890IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.64869897IPR000048IQ motif, EF-hand binding site
PfamPF006121.4E-5870890IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1012 aa     Download sequence    Send to blast
MQFFWSIFFQ QFGAVPSYHS IISAQENHER FPITPEPPKK PPSIAYIPQD FFIFQQMPYF  60
KNIVPSAGGS LFLYNRRVNS TNKLLDTKRL VGNVDALSCY YAHGEQNPCF QRRCFWMLEP  120
AYEHIVLVQY REVAEGRYYS SLLSNGPPES HSSLRHSNAI HGNQCHNSPS GISEGSESYQ  180
SYSNLSSLTE VTSYSMNKEH NRDSKTLLSI PELGQTFLEQ NADVYRADNC NMANKSGLNV  240
ALKKIAEQLS LGDDDDDYIY SNQAQPLGST KNVEAGADNQ LTTRPEGIQN GLGRNIAPSW  300
EDMLHCSSGL PTSSIYQLDS QYQHNLEHQQ PGGMDSSDLR IQLSAAKRFL LGPEDSIESP  360
SSNFELENVG NSGTGTHDGR LESSLNPDWK TRALLAFQRN SQGSQIEELF GHGQFEPSTR  420
ADSRLTLGQK RLFNIREISP EWAFSYEITK VIITGDFLCD PLNSCWAVMF GNSEVPAKMV  480
QPGVLRCYTP LHSSGKLTLC ITSGNREVCS EVKDFEFRAQ PAASNLTEIA PSSRILKSNE  540
EILLVAKFAR MLLCENESSD PSGDDSQCKQ CPKLKMNKEH WDQLIDELKL GCEHPLATID  600
WIMEELLKSN LQQWLSTKLQ AYNGAACPLS KHDQGIIHLI CALGFEWALS SVLNAGVGIN  660
FRDSNGWTAL HWAAYFGREK MVATLLAAGA SATAVTDPTA QDPVGKTAAF LASEQGHMGL  720
AGYLSEVSLT SHLASLTIEE SEISEGSAGV EAERAVESIS QRSAQQKGGT EDELSMKDSL  780
AAVRNAAQAA ARIQNAFRAF SFRKRQQKTA RLKDEYGMTQ EDIDELAAAA SSRSYNQTHA  840
LSGQFYDKAA VSIQKKYKGW KGRKNFLNMR RNAVKIQAHV RGHQVRKKYK TFVSTVSVLE  900
KVILRWRRKG HGLRGFRAEQ PAMIDAEEEE EDDDVDFDDD EATRIFRRQK VDEALKEAVS  960
RVLSMVDSPE ARMQYRRMLE EFRQATAESG GSEEVTSLIN SEVVGLDSFM H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08796A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823459.10.0calmodulin-binding transcription activator 4-like isoform X1
RefseqXP_025823460.10.0calmodulin-binding transcription activator 4-like isoform X2
TrEMBLA0A2T7CUC90.0A0A2T7CUC9_9POAL; Uncharacterized protein
STRINGSi009249m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-145Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains