PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08903A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 163aa    MW: 18536.9 Da    PI: 10.0272
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08903AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.6e-14381171496
                                T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                         B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                                  +++p +f+++h  g+  +s++ ++ ++ g+ W+vkl     +++++++++W++Fv  + + egD+++++++g++ f  +v++
  Oropetium_20150105_08903A  38 EKMMIPMNFVKQHvTGEYMNSQMAVVLSPLGKFWQVKL--HLDQSGMFFSNNWSDFVAFHAISEGDVLLIRYEGNMVF--KVTA 117
                                459***********555668889***************..555556789************************99999..6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-1925121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1725121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.19625121IPR003340B3 DNA binding domain
CDDcd100172.36E-1626118No hitNo description
SMARTSM010198.7E-928121IPR003340B3 DNA binding domain
PfamPF023622.8E-1238115IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MEKELLSILV FSIMANKNIK GVSCKPQFIR VMDLDFMEKM MIPMNFVKQH VTGEYMNSQM  60
AVVLSPLGKF WQVKLHLDQS GMFFSNNWSD FVAFHAISEG DVLLIRYEGN MVFKVTAFGL  120
SGSKKCFKNQ DSRVQQHVEN VKAIMTSHIV KKIRGQMASL PH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08903A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977888.14e-54putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS749e-37Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLK3YCY51e-52K3YCY5_SETIT; Uncharacterized protein
STRINGSi012086m2e-53(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.18e-13B3 family protein