PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09207A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 225aa    MW: 25362.8 Da    PI: 10.6738
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09207AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM23.71.4e-076313356126
                        NAM  56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmhey 126
                                 ++yf++++++ +      +r    g+W ++gk+ke  ++     +++  ++k+ L ++ +  +++ ++ Wvmhe 
  Oropetium_20150105_09207A  63 LKVYFYVRTKHVAL---PDRRCDGGGTWVSQGKKKESDKElvvsgGEKINWTKRNLNLHME--EHSGSCGWVMHEH 133
                                46899999877654...57788899*******97776555555557777899*******43..33449******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023659.9E-560133IPR003441NAC domain
SuperFamilySSF1019417.72E-762140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSSPAVPLIV KLTTXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXP  60
KDLKVYFYVR TKHVALPDRR CDGGGTWVSQ GKKKESDKEL VVSGGEKINW TKRNLNLHME  120
EHSGSCGWVM HEHFINASPS LKIYSISFTG HGQKRKRAAE DDGADEPEAQ HLRVDVASAV  180
GDSGFLPALA LGRPPRERPQ IKTRTRRRRS SSTVMLLLKT ISQR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09207A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946