PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09313A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 421aa    MW: 45394.3 Da    PI: 7.8374
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09313AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.7e-32248303156
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                kpr++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Oropetium_20150105_09313A 248 KPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 303
                                79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.364245305IPR017930Myb domain
SuperFamilySSF466892.22E-17245306IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28246306IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-27248303IPR006447Myb domain, plants
PfamPF002491.9E-6250301IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEMDPPPPPP QSVHAAAGDR RRCREYLLAL EEERRKIQVF QRELPLCLDL VTQTIERMRS  60
QVDGVGSEET VSDHGPVLEE FMPLKPSLSL SSSEEEHDSA RDANRVVVGK KEDTAAPPPE  120
TKKATPDWLQ SVQLWSQEPL HHKVPYSLKP NFCVTELVPC KPVALKARKS GGAFQPFEKE  180
KRVEVPASST TAAAAASSAV VGEDDSGGDK AASVDDTAEK HGSDKETSKD ASNKGKDKEG  240
LSPNCNRKPR RCWAPELHRR FLQALQQLGG SHVATPKQIR ELMKVDGLTN DEVKSHLQKY  300
RLHTRRPNST VQSSSPSAAP PAPQFVVVGG IWVPXXXXXX XXXXAAAAAQ PPVQQLAADA  360
PGSASTLYAP VATLPSGSEQ QLQSVQRQPS RCSESRRSGS AGDARSASPA MSSSSQTTSA  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-13248301255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-13248301255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-13248301154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-13248301154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-13248301154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-13248301154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-13248301255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-13248301255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-13248301255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-13248301255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-13248301255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-13248301255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09313A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0912661e-103FP091266.1 Phyllostachys edulis cDNA clone: bphylf038j06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954868.31e-165transcription factor NIGT1
SwissprotQ6Z8691e-122NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLA0A0A9G3F31e-172A0A0A9G3F3_ARUDO; Uncharacterized protein
STRINGSi019945m1e-167(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.12e-62G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]