PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_09427A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

M-type_MADS

Protein Properties

Length: 217aa MW: 23275.3 Da PI: 9.9327

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_09427A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.9	4.7e-22	17	64	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rie++ rqv fskRr+g++KKA+ELS+LC+a+va ++fs+ gk + + Oropetium_20150105_09427A 17 RIESDEARQVCFSKRRAGLFKKASELSTLCGADVAAVVFSPAGKAFSF 64 8******************************************97766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.83E-29	8	84	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.9E-35	8	67	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.338	8	68	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.91E-39	9	77	No hit	No description
PRINTS	PR00404	8.7E-20	10	30	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.5E-26	17	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.7E-20	30	45	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.7E-20	45	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MAPRRPSMGR QKIEIRRIES DEARQVCFSK RRAGLFKKAS ELSTLCGADV AAVVFSPAGK 60 AFSFGHPSVE SILDRFLASS SSSLSSPHND ASSAAAGLTS AGDRAVSELN RQYGELRALL 120 DAEKARQERA DEAMRKERAA NSPAMALIDP DLGAMRYYEL VAFERALTSV QAAVRASADQ 180 LLRDALLVDM MGRRGRQSAT PQLAGAGRGG GVLDFNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	4e-16	8	88	1	76	MEF2 CHIMERA
6byy_B	4e-16	8	88	1	76	MEF2 CHIMERA
6byy_C	4e-16	8	88	1	76	MEF2 CHIMERA
6byy_D	4e-16	8	88	1	76	MEF2 CHIMERA
6bz1_A	3e-16	8	95	1	83	MEF2 CHIMERA
6bz1_B	3e-16	8	95	1	83	MEF2 CHIMERA
6bz1_C	3e-16	8	95	1	83	MEF2 CHIMERA
6bz1_D	3e-16	8	95	1	83	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_09427A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU962654	1e-100	EU962654.1 Zea mays clone 244495 DNA binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806827.1	3e-96	agamous-like MADS-box protein AGL29
Swissprot	Q4PSU4	1e-33	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	A0A1E5VA38	8e-97	A0A1E5VA38_9POAL; Agamous-like MADS-box protein AGL61
STRING	Pavir.J11717.1.p	5e-96	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1224	36	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	9e-32	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_09427A

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]