PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09450A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family YABBY
Protein Properties Length: 354aa    MW: 38311.5 Da    PI: 10.2791
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09450AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY28.54.8e-095073528
                      YABBY  5 ssseqvCyvqCnfCntilavsvPs 28
                                +seq+Cyv+C fC+t+l+vsv  
  Oropetium_20150105_09450A 50 PASEQLCYVHCHFCDTVLVVSVXX 73
                               689******************965 PP
2YABBY133.13.5e-41223289106170
                      YABBY 106 deevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                                +e +pr+ +  v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafs+aaknWahfP+ihfgl
  Oropetium_20150105_09450A 223 KEPSPRTNNavVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSTAAKNWAHFPHIHFGL 289
                                445566555459*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.2E-65173IPR006780YABBY protein
PfamPF046901.7E-39221289IPR006780YABBY protein
SuperFamilySSF470951.83E-7233282IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.3E-4238281IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSSSSSSSSA ASAAAVFPPS PQTQTPPPLL VENLPPLNQL SPVAAAAAAP ASEQLCYVHC  60
HFCDTVLVVS VXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXTNT PTAAAAVTSS  120
TITNNTAITT PPAPAPVSSV NNNNGHQFHF PNPSSLNNLA PNPPHHQSIL DEISSANPSL  180
QLLEHQQQHG LSGLIPGGAR NTAXXXXXXX XXXXXXXNKG ANKEPSPRTN NAVVNRPPEK  240
RQRVPSAYNR FIKDEIQRIK AGNPDISHRE AFSTAAKNWA HFPHIHFGLM PPDHHGLKRT  300
NLLPQASSIK LWDRAGSPDK DTRKLQPPAD AVRPRKGRKQ IVHASPDEIS SRP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09450A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3302286e-88AY330228.1 Triticum aestivum YABBY protein (YAB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796914.13e-88protein YABBY 3-like
TrEMBLA0A2S3IKW57e-87A0A2S3IKW5_9POAL; Uncharacterized protein
STRINGSi036788m1e-82(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-35YABBY family protein