PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09483A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-YA
Protein Properties Length: 240aa    MW: 25743 Da    PI: 10.4127
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09483AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA85.58e-27113170358
                  CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekk..ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                ++YVNaKQ+++Il+RR +Rak+ +e++  + + +rkpylheSRh hAlrR+RgsgGrF
  Oropetium_20150105_09483A 113 AVYVNAKQFKGILRRRLARAKAPRERRggVVSMKRKPYLHESRHLHALRRARGSGGRF 170
                                69***********************9999679*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.4E-28109173IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.408110173IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.7E-20113135IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.8E-24114170IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.7E-20147170IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEYQEHGIGF PLQQDAAAAK FPFISSAGGS SYPGKELAFH EPSAPTTLAY PPWQDYKFKL  60
ALGRSSLLGV CNADQRQSYG VCSTFGAHVT ETYKKHGRAK VLLHPVIAVE EPAVYVNAKQ  120
FKGILRRRLA RAKAPRERRG GVVSMKRKPY LHESRHLHAL RRARGSGGRF LNTRNIVAGE  180
LDGDAGSGGG VPTPRSAAAF INSFGSENAG DAPEQAARPV QDAAGDFLSS PRTNEGGRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A7e-15111172261HAPB protein
4g92_A7e-15111172261HAPB protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09483A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799912.17e-39nuclear transcription factor Y subunit A-10-like
TrEMBLA0A0A9ILA91e-61A0A0A9ILA9_ARUDO; Uncharacterized protein
STRINGLPERR07G03140.15e-37(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146632123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.14e-18nuclear factor Y, subunit A2