PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_09491A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

YABBY

Protein Properties

Length: 36aa MW: 4182.85 Da PI: 11.5298

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_09491A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	43.9	8.7e-14	4	35	99	134
YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfik 134 +++s+n++ +vp + rPPekrqrvPsaynrfik Oropetium_20150105_09491A 4 YSMSNNQQ----QVPIISRPPEKRQRVPSAYNRFIK 35 44554443....345689*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.4E-11	4	35	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 36 aa Download sequence Send to blast
MSMYSMSNNQ QQVPIISRPP EKRQRVPSAY NRFIK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_09491A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	1e-08	YABBY family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_09491A