PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_09502A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

LBD

Protein Properties

Length: 86aa MW: 9648.15 Da PI: 12.3647

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_09502A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	63.2	6.6e-20	5	68	7	70
DUF260 7 vlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearar 70 lrr+C+++Cvlapyfpa+q ++f++vh++FGasnv k+l++l+ e+r +a + l ar r Oropetium_20150105_09502A 5 RLRRRCVPSCVLAPYFPAHQGARFRAVHRVFGASNVAKMLADLRLEDRAEASERLRERTMARSR 68 689**********************************************999888766666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.783	1	85	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.8E-20	4	76	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MTRRRLRRRC VPSCVLAPYF PAHQGARFRA VHRVFGASNV AKMLADLRLE DRAEASERLR 60 ERTMARSRAR FAGTCGSRPS ASSRT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-15	4	77	16	89	LOB family transfactor Ramosa2.1
5ly0_B	2e-15	4	77	16	89	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_09502A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009421201.1	5e-17	PREDICTED: LOB domain-containing protein 12-like
Swissprot	O22132	4e-16	LBD19_ARATH; LOB domain-containing protein 19
STRING	Lus10007525	1e-16	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	5e-16	LOB domain-containing protein 2

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_09502A