PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09708A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 170aa    MW: 19717.6 Da    PI: 9.9737
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09708AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.51.9e-51151421128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                lppGf FhP+d el+++yLk kv+g++++  + i+evdiyk+ePwdLp+  ++  ++++w+fF+ rd+ky+tg r+nrat++gy
  Oropetium_20150105_09708A  15 LPPGFGFHPSDAELISHYLKSKVHGQRIDY-DLIPEVDIYKHEPWDLPSkcSIPIKDNKWHFFAARDRKYPTGARSNRATRAGY 97 
                                79****************************.99***************5245556999************************** PP

                        NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                Wk+tgkd++++  k+++ g+kktLvf++gr p+g++t+W+mhey +
  Oropetium_20150105_09708A  98 WKSTGKDRAIKL-KNRTLGTKKTLVFHEGRPPSGKRTEWIMHEYYI 142
                                ************.8899***************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-567151IPR003441NAC domain
PROSITE profilePS5100550.70815159IPR003441NAC domain
PfamPF023654.8E-2616141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MQIQQKMDAL RDMNLPPGFG FHPSDAELIS HYLKSKVHGQ RIDYDLIPEV DIYKHEPWDL  60
PSKCSIPIKD NKWHFFAARD RKYPTGARSN RATRAGYWKS TGKDRAIKLK NRTLGTKKTL  120
VFHEGRPPSG KRTEWIMHEY YIDENECQGN PDMKRMIMGW ATGTLIQNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-5011421140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09708A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147448.12e-93uncharacterized protein LOC100281057
SwissprotQ7GCL75e-90NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A0A9BHY04e-94A0A0A9BHY0_ARUDO; Uncharacterized protein
STRINGSb03g010130.12e-92(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.13e-63NAC domain containing protein 86
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]