PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09839A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 290aa    MW: 31117.8 Da    PI: 8.0843
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09839AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.27.9e-222599183
                   trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
                               rWt++e+l+Li+arr +e+   r     p+W++vs+++r++g+ r+p qC+++w nl+++ kki ++e+k++ +ss     f 
  Oropetium_20150105_09839A 25 RWTRHETLVLIQARRATEQPAVRV---RPKWAAVSAYCRRHGVDRGPMQCRKRWGNLSWDLKKIVAWEGKKHGQSS-----FW 99
                               8*****************988887...8*****************************************9854444.....33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.2011879IPR017877Myb-like domain
SuperFamilySSF466891.88E-52281IPR009057Homeodomain-like
PfamPF138371.9E-102599No hitNo description
Gene3DG3DSA:1.10.10.604.9E-42578IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MENSPPAVEA AAAAASTTPR SRLPRWTRHE TLVLIQARRA TEQPAVRVRP KWAAVSAYCR  60
RHGVDRGPMQ CRKRWGNLSW DLKKIVAWEG KKHGQSSFWD MRGDERRARL LPSSFDREVY  120
DAIVGGAAAA ADDAGEEEVP DFGEEVDEQP PIMVMPISAR RYEPPPPASS EHQCSNPVTE  180
SAKKKASGGA ASDKNSTSQD VGGGGGEGYK DSDATFVAGA AAEDGAATGT PVVSIGKQVI  240
EALVTGNRAL AQHLEAQRRS WAVDREQRTA LLAALNRLGD AVTRIADKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09839A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819294.11e-128trihelix transcription factor ASR3-like
TrEMBLA0A2S3HNF51e-126A0A2S3HNF5_9POAL; Uncharacterized protein
STRINGPavir.Ea03865.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.18e-33Trihelix family protein