PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09929A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 224aa    MW: 25704.8 Da    PI: 5.0664
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09929AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.12.4e-083173648
                        NAM  6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                                F+Pt++elv ++L+++++g + +++ ++ e+d +++ PwdL 
  Oropetium_20150105_09929A 31 GFDPTEDELVLHFLRPQLRGFPPRVSGAVVEADPCSAAPWDLL 73
                               6************************999*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.62726181IPR003441NAC domain
SuperFamilySSF1019412.22E-93075IPR003441NAC domain
PfamPF023651.6E-430155IPR003441NAC domain
SuperFamilySSF1019413.14E-7122181IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MADEMNLRAX XXXXXXXXXX XXEEEEAEEV GFDPTEDELV LHFLRPQLRG FPPRVSGAVV  60
EADPCSAAPW DLLAXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXWCRVKYC FYVRVGEEHG KQQRSTGWVM EEYEITDPTC YRRXXXXXXX XYWVLCRVRK  180
SSRTAAVTLS SPSWSAGSSS ALRKRMLAAG CPVGVEAERF LLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09929A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3770681e-32AK377068.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3147G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9C0L55e-53A0A0A9C0L5_ARUDO; Uncharacterized protein
STRINGOPUNC01G42700.12e-41(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528