PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09974A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family SRS
Protein Properties Length: 339aa    MW: 34299.7 Da    PI: 7.7866
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09974AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702221.32e-681162813153
                     DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelk 79 
                                sg+a+CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerq+ql   s +a++s        a++a k++r   
  Oropetium_20150105_09974A 116 SGAATCQDCGNQAKKDCSHNRCRTCCKSRGFDCSTHVKSTWVPAARRRERQTQLGVGSGSASSSPaaastpaAASACKKPRL-- 197
                                7889*************************************************98765554444344556555555566665.. PP

                     DUF702  80 skkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                                 ++q+++s+t++s+a+++++++t+s          lP++v+++avf+cvrv+s+ddge+e+aYq++v+i+GhvfkG+LydqG++
  Oropetium_20150105_09974A 198 LSSQTTTSHTSTSNATTPRSFDTTSshqdasfrdgLPRQVRAPAVFKCVRVTSIDDGEDEYAYQATVTINGHVFKGLLYDQGVD 281
                                58999999**************9999********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.9E-63118281IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.7E-27120162IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.2E-28233280IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MVVVAPAASF HHTHHHHHHH EAAAAAAAAA AAAAAADPIF PLLSAGPCVL DPDAAAKSSA  60
PPASSSAAIQ FWQPQSPSSA AAAANPNPSA SPFAYLKTTT TKPLPMLETT TAAGSSGAAT  120
CQDCGNQAKK DCSHNRCRTC CKSRGFDCST HVKSTWVPAA RRRERQTQLG VGSGSASSSP  180
AAASTPAAAS ACKKPRLLSS QTTTSHTSTS NATTPRSFDT TSSHQDASFR DGLPRQVRAP  240
AVFKCVRVTS IDDGEDEYAY QATVTINGHV FKGLLYDQGV DGSTSNDDST AGVPNMSELH  300
LGGASASGPG SGAAVPTAEL YGGGHNLIGG SSFGNTMT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09974A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818814.11e-129protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A3L6SLU11e-132A0A3L6SLU1_PANMI; Protein LATERAL ROOT PRIMORDIUM 1
STRINGPavir.Ea03961.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-55Lateral root primordium (LRP) protein-related