PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_10144A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bZIP

Protein Properties

Length: 232aa MW: 25279.4 Da PI: 9.9397

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_10144A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.5	1e-16	168	210	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ eLe k+++L++eN++L+k Oropetium_20150105_10144A 168 RRQKRMIKNRESAARSRARKQAYTNELEIKIAKLQEENDRLRK 210 79*************************************9994 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.0E-11	164	224	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.013	166	210	IPR004827	Basic-leucine zipper domain
CDD	cd14707	4.79E-24	168	213	No hit	No description
Pfam	PF00170	8.3E-13	168	210	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.7E-13	168	212	No hit	No description
SuperFamily	SSF57959	1.31E-10	168	214	No hit	No description
PROSITE pattern	PS00036	0	171	186	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MASRGVAGSG SLSRQGSVYS LTLTEVETQL GEPLRSMNLE DLLRTVLPAA AAEATPGKKT 60 VDEVWRDIQN ASAGRHPTMA EMTLEDFLSR AGVNTAADGG PHWLHHNQYQ QQQQQYAPPV 120 GVVAGPPPSL YCDAGSGSGG GGGGFLSSQL VSGRKRDAEG VVEKTVERRQ KRMIKNRESA 180 ARSRARKQAY TNELEIKIAK LQEENDRLRK LKKYLAWHDV SKHTATERFI L*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_10144A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT033247	3e-45	BT033247.1 Zea mays full-length cDNA clone ZM_BFb0124H20 mRNA, complete cds.
GenBank	BT035906	3e-45	BT035906.1 Zea mays full-length cDNA clone ZM_BFb0087N11 mRNA, complete cds.
GenBank	BT055475	3e-45	BT055475.1 Zea mays full-length cDNA clone ZM_BFb0325H08 mRNA, complete cds.
GenBank	EU975790	3e-45	EU975790.1 Zea mays clone 500961 EEL mRNA, complete cds.
GenBank	KJ728208	3e-45	KJ728208.1 Zea mays clone pUT6484 bZIP transcription factor (bZIP92) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020183813.1	2e-75	ABSCISIC ACID-INSENSITIVE 5-like protein 3
Swissprot	Q9C5Q2	9e-54	AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBL	A0A3L6QU58	7e-78	A0A3L6QU58_PANMI; ABSCISIC ACID-INSENSITIVE 5-like protein 2
STRING	Pavir.Ba00263.1.p	2e-74	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4441	33	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	2e-49	bZIP family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_10144A

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153]