PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_10171A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 229aa    MW: 25673.4 Da    PI: 7.5007
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_10171AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.43.9e-55151421129
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrFhP+dee+v++yL++k+ ++ + +  vi++vd++k+ePwdLp+++k +ekewyfF+++d+ky+tg+r+nrat+sgyWk
  Oropetium_20150105_10171A  15 LPPGFRFHPSDEEIVTHYLTPKALNRLFAC-LVIADVDLNKIEPWDLPRMAKMGEKEWYFFCHKDRKYPTGTRTNRATASGYWK 97 
                                79*************************999.78***************988999****************************** PP

                        NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                atgkdke+++ +g lvg+kktLvfy grap+gekt W+mheyrle
  Oropetium_20150105_10171A  98 ATGKDKEIFRGRGVLVGMKKTLVFYLGRAPRGEKTPWIMHEYRLE 142
                                *******************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-6410165IPR003441NAC domain
PROSITE profilePS5100558.48615165IPR003441NAC domain
PfamPF023654.8E-2916141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSEVYQGDEM AQLELPPGFR FHPSDEEIVT HYLTPKALNR LFACLVIADV DLNKIEPWDL  60
PRMAKMGEKE WYFFCHKDRK YPTGTRTNRA TASGYWKATG KDKEIFRGRG VLVGMKKTLV  120
FYLGRAPRGE KTPWIMHEYR LEGKLPPSLP RAAKDEWAVC RVFNKDLAAK QPGQTAAAAT  180
PPASDIEWTD PLTFIEDFLD TQLPPLIDSP PFVKGEAASS SSGAVPGIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-5741716171NO APICAL MERISTEM PROTEIN
1ut4_B3e-5741716171NO APICAL MERISTEM PROTEIN
1ut7_A3e-5741716171NO APICAL MERISTEM PROTEIN
1ut7_B3e-5741716171NO APICAL MERISTEM PROTEIN
4dul_A3e-5741716171NAC domain-containing protein 19
4dul_B3e-5741716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_10171A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694971.11e-109PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9SQQ63e-89NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A0A9IAM41e-120A0A0A9IAM4_ARUDO; Uncharacterized protein
STRINGLPERR07G23450.11e-108(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.14e-89NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]