PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_10203A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 98aa    MW: 10727.5 Da    PI: 12.2984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_10203AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.32.4e-073984555
                               HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                                +++ r+RR+ri  + ++L +l+P         Kl  ae+Le+A +++k Lq
  Oropetium_20150105_10203A 39 ESAAARKRRSRIGAKTAQLSRLIPGgH------KLKTAEMLEEAARHVKLLQ 84
                               56788*******************955......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.3E-93287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-103290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.80E-63386No hitNo description
PROSITE profilePS5088812.1443483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-53984IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-64089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MTEPSFPMPR RTPPHQPQPF VRSGAGVKKT PTRRQKSVES AAARKRRSRI GAKTAQLSRL  60
IPGGHKLKTA EMLEEAARHV KLLQAQDGVL ALMQVSH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_10203A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661333.11e-22uncharacterized protein LOC101765829
TrEMBLA0A3L6S6L12e-22A0A3L6S6L1_PANMI; Uncharacterized protein
STRINGPavir.Ia04589.1.p7e-26(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.12e-13bHLH family protein