PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_10525A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family CAMTA
Protein Properties Length: 699aa    MW: 75958.5 Da    PI: 4.6283
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_10525AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-142.41.3e-13387272106
                       CG-1  72 kLKvggvevlycyYahseenptfqrrcywlLeeel 106
                                 L+vg+v+vl+cyYah+een++fqrr+ywlLe + 
  Oropetium_20150105_10525A  38 DLQVGSVDVLHCYYAHGEENANFQRRTYWLLEDKE 72 
                                599****************************9873 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143717.009190IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-93772IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.24E-5331386IPR014756Immunoglobulin E-set
SuperFamilySSF484036.53E-17446561IPR020683Ankyrin repeat-containing domain
CDDcd002041.15E-13447559No hitNo description
Gene3DG3DSA:1.25.40.201.1E-16457562IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.202467561IPR020683Ankyrin repeat-containing domain
PfamPF127965.5E-7473562IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.003500532IPR002110Ankyrin repeat
SMARTSM002480.025500532IPR002110Ankyrin repeat
SMARTSM002481000539568IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
IFHRYYWKLR TGGCGPPKSA RYCQTTKSSP LPLSHRTDLQ VGSVDVLHCY YAHGEENANF  60
QRRTYWLLED KEAEEIAGLS NADSPACSNS FASQSQVASQ TMDAESPISG QISEYEDAET  120
GLAVSLSSFC IICTNVSKAK FGATDNCRAS SRYHPFTEVQ QPVDGIMMNN LLGASVPCAS  180
PNNLGKPFTL PSKPTTASMN NHFVSHNDIS SVFNESGAGF SEPFGEYASG FTEPALHSSV  240
ATMESNNLDD SSHLQTFVSE ALYTNNLTQK EADALCAVGI TSSQAENDSY TDRNFRYPLL  300
KQSSLDLFKM EPDGLKKFDS FSRWMSSELA EVLITGTFLA NKENVEKCKW SCMFGDVEVP  360
AEVLADGSLR SYTPVHHSGR VPFYLLSLGP DDYEKYVLSS GNKSELVDTI NALMLDDKFS  420
NLALPSDEKF SDARDQNLEK SVKEKLYYWL IHKIHDDGKG PNVLGKEGQG VIHLVAALGY  480
DWAIKPIVAA GVNVNFRDIR GWTALHWAAS CGRERTVCAL ITNGAASGAL TDPTPQFPSG  540
RTAADLASEN GYKGIAGFLA ESALTSHLSA LTLKESQVDN VAEICGSAAP ADFAESSSAQ  600
LACVEDSQAE SLKDSLSAVR KSTQAAARIF QAFRVESFHR KKVIEYGDDD CGLSDERTLS  660
LELQNKMLSD SAVVDGSDFM AELEELCRDD GDATMSTI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_10525A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043415e-90AP004341.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0524E08.
GenBankAP0149635e-90AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126155e-90CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308917.10.0calmodulin-binding transcription activator 3 isoform X3
TrEMBLA0A1B6QFM10.0A0A1B6QFM1_SORBI; Uncharacterized protein
STRINGGRMZM2G431243_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.15e-83ethylene induced calmodulin binding protein