PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_10577A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GATA
Protein Properties Length: 227aa    MW: 24719.2 Da    PI: 10.8127
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_10577AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.22.6e-14192225132
                       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                                C  Cg +   Tp++Rrgpdg++tLCnaCG+ yrk
  Oropetium_20150105_10577A 192 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRK 225
                                6667777777***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF482087.56E-631145IPR008928Six-hairpin glycosidase-like
Gene3DG3DSA:1.50.10.106.4E-53254IPR012341Six-hairpin glycosidase
SuperFamilySSF577163.56E-9188225No hitNo description
Gene3DG3DSA:3.30.50.101.1E-10191225IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.4E-12192225IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVPDLASILC RRARRCVCVP PRLLPVRSRS RGDGDSDNYC WQRPEDMTTS RPAYPAVRVR  60
RQVIQGPVQR QRRRRTRRRP AGTAARAAMG GAVAALRHGP ARVPRIRGRQ DDNADESGGT  120
GWAVSELSWD IKYAGLQVLA THSQGCDAMM HMLVAPDGGG GELQPFTAQP AEQVLELHRD  180
NAADGLEGHV RCLRCGISGN ATPHMRRGPD GPRTLCNACG IAYRKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16072RQVIQGPVQRQRR
26976RQRRRRTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_10577A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150391318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.32e-11GATA-type zinc finger protein with TIFY domain