PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_10590A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 461aa    MW: 49788.5 Da    PI: 7.0199
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_10590AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.5e-1196122127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                ++++ C+++ ++GtC++G +CkF+H++
  Oropetium_20150105_10590A  96 PGEPDCSYYVKFGTCRFGTKCKFNHPE 122
                                5789*********************96 PP
2zf-CCCH34.14.5e-11218242226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                ++++C++++rtG Cky  +CkF+H+
  Oropetium_20150105_10590A 218 GEKECPYYMRTGSCKYATNCKFHHP 242
                                6789********************9 PP
3zf-CCCH201.2e-06361387127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                +++++Cr+f r+G+Cky  rC+++H++
  Oropetium_20150105_10590A 361 PGQPECRNFVRSGFCKYKMRCRYHHPR 387
                                5789*********************96 PP
4zf-CCCH22.12.6e-07408433227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                +++ C ++ r+G CkyG+ C F+H++
  Oropetium_20150105_10590A 408 DQPVCTYYCRFGVCKYGPACMFNHPF 433
                                6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-595122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.20695123IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-897122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5100124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061217244IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-5218243IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-8218242IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5220244IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4222241IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036360387IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892360388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5364390IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-5366390IPR000571Zinc finger, CCCH-type
SMARTSM003560.041406433IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61406434IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5407433IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4408433IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MADADAKPPP LGDAAASSPI ASISPSDAAA AAAIEEQLAG LGLAVAGGGA GFEPSGWDDG  60
PAPAVVGDDE VVPCDKVQVA VSSPSADARV RFPRRPGEPD CSYYVKFGTC RFGTKCKFNH  120
PERKKKTRVK GSGGSGSGSN SSSNKASSPD DDQVTKEEYE GLAPDISDSS IAAEPEKGIY  180
FKKLDETNIT NKNKIMKGAK DKRKETIAEG SAQEECKGEK ECPYYMRTGS CKYATNCKFH  240
HPDPSTTSSK EPVEHENGDT SQHNVQGPSQ TNVQIWPDQR AMNEQHIPYL PPQSYNSGMV  300
PPQGLYPSPD WSGYHQVPLN PYYPPGVPFQ HFTAHLNHPM YKTADVPGHQ QVATDDYPER  360
PGQPECRNFV RSGFCKYKMR CRYHHPRSQL PAPAPAGLSP LGLPIKPDQP VCTYYCRFGV  420
CKYGPACMFN HPFNFNFGPP VHAAGPPVPG QYPTPANFTV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_10590A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008661568.10.0uncharacterized LOC100272717 isoform X8
SwissprotQ2QTY21e-175C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLC0PJC30.0C0PJC3_MAIZE; Uncharacterized protein
STRINGGRMZM2G006493_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-43C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]