PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_11395A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Trihelix

Protein Properties

Length: 396aa MW: 45629.2 Da PI: 7.5178

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_11395A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.4	6.8e-22	81	176	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr. 71 +Wt ++v++L+ a+++++e+++++ +kk++W+ vs +m erg+ +sp+qC++k+++lnkryk+++e+ +++ Oropetium_20150105_11395A 81 KWTSDMVKLLVSAVSYIDEDVEADHgsssgrrkhvmlKKKGKWKIVSMAMNERGCAVSPQQCEDKFNDLNKRYKRLTEILGRGr 164 7******************9875567788899999*****************************************9995 PP trihelix 72 tsessstcpyfd 83 ++e +++ ++++ Oropetium_20150105_11395A 165 ACEIVEKPVLLE 176 677777766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.8E-20	79	204	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MQRHQQQQQF HHFAPPPPQV HQGMFAVPAA NPMQDQLENA VKTSLXXXXX XXXXXXXXXK 60 ASATAAAAGA SGGASQWHRV KWTSDMVKLL VSAVSYIDED VEADHGSSSG RRKHVMLKKK 120 GKWKIVSMAM NERGCAVSPQ QCEDKFNDLN KRYKRLTEIL GRGRACEIVE KPVLLEKVSL 180 SAKLKEEAKK HLNSKHLHYE EMCSYHNRNR FCLLDDPALQ KSLRLALRSG EEQGKKSSFG 240 YEDDDDQMMF SDDDDDDDEC NDYVEVSAED RHHRAHITKR PKHDHEETHC GSHLSEVAPV 300 DMNRMLSEGS GGPAAEKNLS VMHSNQIEQE RLKIKAQMLK LQQRHFKWLR FSKEKDRELE 360 KMRLENERME LENERMELEL KLKEMEMGIK PKRTW*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MQRHQQQQQF HHFAPPPPQV HQGMFAVPAA NPMQDQLENA VKTSLXXXXX XXXXXXXXXK  60
ASATAAAAGA SGGASQWHRV KWTSDMVKLL VSAVSYIDED VEADHGSSSG RRKHVMLKKK  120
GKWKIVSMAM NERGCAVSPQ QCEDKFNDLN KRYKRLTEIL GRGRACEIVE KPVLLEKVSL  180
SAKLKEEAKK HLNSKHLHYE EMCSYHNRNR FCLLDDPALQ KSLRLALRSG EEQGKKSSFG  240
YEDDDDQMMF SDDDDDDDEC NDYVEVSAED RHHRAHITKR PKHDHEETHC GSHLSEVAPV  300
DMNRMLSEGS GGPAAEKNLS VMHSNQIEQE RLKIKAQMLK LQQRHFKWLR FSKEKDRELE  360
KMRLENERME LENERMELEL KLKEMEMGIK PKRTW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_11395A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952693.1	1e-172	uncharacterized protein LOC101766818
Refseq	XP_004952694.1	1e-172	uncharacterized protein LOC101766818
TrEMBL	A0A0A9DXA8	0.0	A0A0A9DXA8_ARUDO; Uncharacterized protein
STRING	Si017397m	1e-171	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-60	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_11395A