PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11606A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family E2F/DP
Protein Properties Length: 249aa    MW: 28499.8 Da    PI: 9.9017
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11606AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP61.31.4e-1952127371
                    E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse..........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                                +++Lr +++    + +k+e+ g++t+neva+e  +e          d+k++rRR+YD++NVL al++ +k +k+ei+w+g
  Oropetium_20150105_11606A  52 GWGLREYSRI---VSKKVEAkGRTTYNEVAEEVFTEltlmlegqelDEKTIRRRVYDAFNVLIALRVFAK-DKKEIKWMG 127
                                7899****99...99999999************999**********************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.3E-3048130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.3E-1850127IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.77E-1453128IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.2E-1654127IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144582.33E-26132231IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.62E-28134239No hitNo description
SMARTSM011387.3E-23134241IPR014889Transcription factor DP, C-terminal
PfamPF087811.8E-21135234IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MASPCDDATS PASEMTLIRE GARCSASGNA ACDKGNVDAK RSKKDSTHRI NGWGLREYSR  60
IVSKKVEAKG RTTYNEVAEE VFTELTLMLE GQELDEKTIR RRVYDAFNVL IALRVFAKDK  120
KEIKWMGLSN LRCEKIKTLE EVHKELMTKI KNKKKLLQDI EKQFDDLQHI KFRNQVHQQP  180
VESANGIFLP FLLIKTSRKA RVEIEISEDS KFACFDFNRT PFTLHDDVSI LNGIKRNSLK  240
RPGFVPRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-2141128189PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11606A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701631.11e-115transcription factor-like protein DPB
TrEMBLA0A3L6SSL81e-114A0A3L6SSL8_PANMI; Transcription factor-like protein DPB
STRINGOPUNC01G26430.11e-110(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.16e-50Transcription factor DP