PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11631A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 322aa    MW: 34740 Da    PI: 10.2906
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11631AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.96.2e-1418104186
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                                +W++ e+ aL++a  ++  +l+rg+l++p+W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++ ++      s
  Oropetium_20150105_11631A  18 CWSEGETAALVDAWGSRYLELNRGSLRQPQWREVADAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGGS------S 95 
                                7*******************************************999999*********************999986......5 PP

                   trihelix  78 tcpyfdqle 86 
                                 +p++ ql+
  Oropetium_20150105_11631A  96 PWPFYGQLD 104
                                799999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-2416104No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYLELNR GSLRQPQWRE VADAVNSRPG  60
ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGGSSPWPFY GQLDILVGPT LSASAGGGAA  120
GKRPSPPRAL PPMLRRRQSP SRSPSPPMAL PLSMSNYGRG SNLPSAVLHK AAAAAAAAAD  180
SDSYDGYNNN NNNDYEDDGA SQQSASRSVS SRSGGGDAAA APAVGSKRKS SGSGGFGELA  240
RAIETFAEMY ERMEAAKQRH AEEMERQRIK FLKDLELKRM QAFVDMQMQL ARAKHARKGD  300
ASSEMLMSLA ALPFLSAPSY L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11631A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9617751e-149EU961775.1 Zea mays clone 238196 6b-interacting protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458303.11e-149trihelix transcription factor ASIL2
TrEMBLA0A3L6FIV11e-152A0A3L6FIV1_MAIZE; Trihelix transcription factor ASIL2
STRINGSb03g030880.11e-148(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-29sequence-specific DNA binding transcription factors