PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11698A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GATA
Protein Properties Length: 232aa    MW: 24390.5 Da    PI: 7.3933
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11698AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20107141135
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Oropetium_20150105_11698A 107 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 141
                                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.668101156IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-13101142No hitNo description
SMARTSM004012.4E-17101152IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.9E-17105141IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.49E-13106138No hitNo description
PfamPF003205.1E-18107141IPR000679Zinc finger, GATA-type
PROSITE patternPS003440107132IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MLHEAAPCTC GLLYGSCGGG CSLLFAGDHH HHYYNYKQCG GDGGEGGPYG SGSVDCTLSL  60
GTPSTRRAEA ARAAPVAASG MHWDPSSGCN NNNSSSRHQE SASARRCANC DTTSTPLWRN  120
GPRGPKSLCN ACGIRYKKEE RRXXXXXXXX XXLASSDTGT EYAAAYGYAH HQPQKQWGCY  180
GPAAASFGTM FGDAAAADDG PCLPWGLGVM PAPSPAFGTA VREMPSLFQY Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11698A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0734643e-45AK073464.1 Oryza sativa Japonica Group cDNA clone:J033044C20, full insert sequence.
GenBankAK1012873e-45AK101287.1 Oryza sativa Japonica Group cDNA clone:J033033F09, full insert sequence.
GenBankDQ7845463e-45DQ784546.1 Oryza sativa Japonica Group putative NECK LEAF 1 (NL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569499.15e-89GATA transcription factor 19
TrEMBLI1HQ381e-87I1HQ38_BRADI; Uncharacterized protein
STRINGBRADI2G45750.12e-88(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.11e-26GATA transcription factor 19