PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11736A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 221aa    MW: 23298.7 Da    PI: 5.9097
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11736AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY832.9e-262182159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                               ldDg +WrKYGqK++ g+++pr+Y+rCt++   gC++ k+v+r++ dp +++++Y+g+H++ 
  Oropetium_20150105_11736A 21 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhtqGCQASKQVQRADGDPLLFDVVYHGDHTCA 82
                               58***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-28884IPR003657WRKY domain
SuperFamilySSF1182905.23E-251582IPR003657WRKY domain
PROSITE profilePS5081121.2991679IPR003657WRKY domain
SMARTSM007749.5E-392183IPR003657WRKY domain
PfamPF031062.7E-252281IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
KTLPKWSTKV RVSAVQDVTP LDDGLSWRKY GQKDILGAKY PRAYFRCTHR HTQGCQASKQ  60
VQRADGDPLL FDVVYHGDHT CAQVQAQAAA HLGNTTANAE NSQQQPQSAA GLEQATSASS  120
SQMFERTVLP MIPTNNKPAA NDSACETGGG FPAAGCLIAA SSGFTATATT KPESQLVSSS  180
GSNHTAVGAP PNDVPEVQLA STTNSPIMGD DMDFLFSLDD A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-221881568OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11736A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284191e-84KJ728419.1 Zea mays clone pUT6724 WRKY transcription factor (WRKY74) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458250.16e-71probable WRKY transcription factor 41
TrEMBLC5XFA61e-69C5XFA6_SORBI; Uncharacterized protein
STRINGSb03g029920.12e-70(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.14e-36WRKY family protein