PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11810A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 228aa    MW: 24871.2 Da    PI: 9.8322
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11810AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-1877130356
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                k+ +++keq + Lee F+ n++++ +++e LA++l+L  rqV vWFqNrRa+ k
  Oropetium_20150105_11810A  77 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAANLKLRPRQVEVWFQNRRARTK 130
                                67789***********************************************98 PP
2HD-ZIP_I/II122.22.6e-3977164290
                HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                                kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eve
  Oropetium_20150105_11810A  77 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAANLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVE 160
                                9*********************************************************************************** PP

                HD-ZIP_I/II  86 eLree 90 
                                eLr +
  Oropetium_20150105_11810A 161 ELR-A 164
                                **9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-1850133IPR009057Homeodomain-like
SuperFamilySSF466893.63E-1960133IPR009057Homeodomain-like
PROSITE profilePS5007116.98972132IPR001356Homeobox domain
SMARTSM003898.2E-1674136IPR001356Homeobox domain
CDDcd000865.03E-1575133No hitNo description
PfamPF000469.3E-1677130IPR001356Homeobox domain
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PfamPF021835.5E-10132164IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.8E-22132175IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGATSPSASG LELTMAVPGL SSSSGSEGSG CNNGNTGNVR VDLDMNQPAS GGEEEFPMGS  60
VDEDEEERGS GGPHRPKKLR LSKEQSRLLE ESFRLNHTLT PKQKEALAAN LKLRPRQVEV  120
WFQNRRARTK LKQTEMECEY LKRCFGSLTE ENRRLQREVE ELRAIRVAPP TVLSPHTRRP  180
LIPASALTMC PRCERITAPS GPAAARTARP APAAVPSFQP RRPSAAF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11810A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0626880.0BT062688.2 Zea mays full-length cDNA clone ZM_BFb0333H18 mRNA, complete cds.
GenBankEU9661900.0EU966190.1 Zea mays clone 292384 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645561.11e-117homeobox-leucine zipper protein HOX3 isoform X1
SwissprotQ0JKX11e-118HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-118HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A3L6SSW71e-117A0A3L6SSW7_PANMI; Homeobox-leucine zipper protein HOX3-like
STRINGOS01T0643600-001e-116(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.11e-59homeobox-leucine zipper protein 17