PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11839A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB
Protein Properties Length: 216aa    MW: 24352.2 Da    PI: 7.6959
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11839AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.1e-071360347
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                                W+    +l+ +a + + ++   +W+ +ar+mg  ++ ++++  +qk+
  Oropetium_20150105_11839A 13 EWSWSQNKLFECALAVYDTDtpdRWHNVARYMGGIKSVEEVRRQYQKL 60
                               7********************************778**********97 PP
2Myb_DNA-binding30.86.7e-10128173346
                                SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                                +WT++E +l+ +a + +  +   +W+ Iar +g  +++ ++ks++q 
  Oropetium_20150105_11839A 128 SWTKQENKLFEQALAVYDRDtpdRWHNIARAVG-SKSAGEVKSYYQL 173
                                7*****************99*************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.529661IPR017877Myb-like domain
SMARTSM007173.9E-61063IPR001005SANT/Myb domain
SuperFamilySSF466895.88E-91268IPR009057Homeodomain-like
CDDcd001676.34E-51361No hitNo description
PROSITE profilePS5129310.678124179IPR017884SANT domain
SMARTSM007171.1E-9125177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-6127181IPR009057Homeodomain-like
PfamPF002491.2E-7128173IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-12128182IPR009057Homeodomain-like
CDDcd001675.85E-7129174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010114Biological Processresponse to red light
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGSSNNNNGS SSEWSWSQNK LFECALAVYD TDTPDRWHNV ARYMGGIKSV EEVRRQYQKL  60
VHDVGHIDSV EAPFQWYGAA APPPARTVQR ELEQREVLLL ADRARPARSE LVQVSIHPSH  120
MASMSMSSWT KQENKLFEQA LAVYDRDTPD RWHNIARAVG SKSAGEVKSY YQLLERDVTR  180
IENGEVAFPA YRCPGAASSR PMGGYEADRL KHLKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-229215192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11839A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961116.18e-43protein RADIALIS-like 3
SwissprotQ1A1731e-26RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1E5UUT92e-74A0A1E5UUT9_9POAL; Protein RADIALIS-like 3
STRINGSi023770m3e-42(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-27RAD-like 6