PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11977A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family DBB
Protein Properties Length: 249aa    MW: 26106.7 Da    PI: 4.544
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11977AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.23e-07446541
                   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                C+ ++   +   C  ++  lC+ C +e+H        H++ p
  Oropetium_20150105_11977A  4 QCDACGGAAAAVVCCADEAALCARCDVEIHAAnklagkHQRLP 46
                               6******99*********************6678888998877 PP
2zf-B_box261.9e-086293334
                   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                                ++C+ ++e ++ +fC +++ llC+dC + +H
  Oropetium_20150105_11977A 62 LPCCDVCQERPAFIFCVEDRALLCRDCDEPIH 93
                               689**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.57147IPR000315B-box-type zinc finger
SMARTSM003362.7E-9447IPR000315B-box-type zinc finger
PfamPF006432.5E-5447IPR000315B-box-type zinc finger
SMARTSM003367.8E-1560107IPR000315B-box-type zinc finger
PfamPF006431.2E-661103IPR000315B-box-type zinc finger
PROSITE profilePS501199.14365107IPR000315B-box-type zinc finger
CDDcd000211.57E-965106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MRIQCDACGG AAAAVVCCAD EAALCARCDV EIHAANKLAG KHQRLPLNPG VDGDAAAAGS  60
PLPCCDVCQE RPAFIFCVED RALLCRDCDE PIHVPGTLSA NHQRFLATGI RVGFSSVCSA  120
GADSLLLPNG SSKPTSATKA PSPAVAAQEV PSSPFLPLSG WAFPSLCIVS LQKDSPLEFK  180
ELEWFADIDL FHGQAPAKAA AEVPELFALP QPATDAGFYK TSGARQTKKP RLELPDDDED  240
YFIVPDLG*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11977A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0688175e-72BT068817.2 Zea mays full-length cDNA clone ZM_BFc0015L23 mRNA, complete cds.
GenBankDQ2459065e-72DQ245906.1 Zea mays clone 22173 mRNA sequence.
GenBankEU9634385e-72EU963438.1 Zea mays clone 262479 salt tolerance-like protein mRNA, complete cds.
GenBankKJ7283005e-72KJ728300.1 Zea mays clone pUT6580 orphans transcription factor (Orphan198) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976063.11e-118B-box zinc finger protein 24
SwissprotQ962882e-64BBX24_ARATH; B-box zinc finger protein 24
TrEMBLC3RVT41e-116C3RVT4_BAMOL; B-box zinc finger protein
TrEMBLK3Y9J21e-116K3Y9J2_SETIT; Uncharacterized protein
STRINGSi010884m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.15e-52DBB family protein
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Imtiaz M, et al.
    Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis.
    Plant Mol. Biol., 2015. 89(1-2): p. 1-19
    [PMID:26253592]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]