PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_12157A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

TCP

Protein Properties

Length: 204aa MW: 21509.3 Da PI: 10.1809

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_12157A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.1	1.4e-33	51	131	9	88
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsssg 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c+++ s s+a +s g Oropetium_20150105_12157A 51 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCSTGPSASTAFHSLLG 131 9********************************************************888884444333333332222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.009	50	104	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.6E-29	50	138	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MASREDSATF QLYQPMAAPT PYPAPMSLAE ADAVVVPAPK KPASRGGGKG KDRHSKVNGR 60 GRRVRMPIVC AARVFQLTRE LGLKSDGQTI EWLLRQAEPS ILAATGSGTT PAVFSCSTGP 120 SASTAFHSLL GKRPRQDDVH HEAAAAVAPF WAALQARPVT WGLSPVQEQA AEAYASVAQQ 180 GHHHLNLLSV LSGATRPAEE SSR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_12157A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064708	2e-86	AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence.
GenBank	AL663019	2e-86	AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence.
GenBank	AP014960	2e-86	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002446818.2	2e-74	transcription factor TCP7
Swissprot	Q9FMX2	2e-37	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0A9DEW8	7e-89	A0A0A9DEW8_ARUDO; Uncharacterized protein
STRING	Traes_2BL_4B6057E06.1	4e-83	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	6e-39	TCP family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_12157A