PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12237A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family DBB
Protein Properties Length: 292aa    MW: 31800.7 Da    PI: 5.2237
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12237AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.3e-06444539
                   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                C+ ++   +++fC  ++  lC  C    H+       H++
  Oropetium_20150105_12237A  4 QCDVCSASAASIFCCADEAALCGPCDRRVHRAnklagkHRR 44
                               7*****999*********************76778888876 PP
2zf-B_box22.22.9e-076497336
                   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36
                               ++ C+ ++e +  +fC++ ++ lC++C +  H  
  Oropetium_20150105_12237A 64 KPLCDICQERKGFFFCKEERSILCRECDVRVHTA 97
                               689******99******************99954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.111147IPR000315B-box-type zinc finger
SMARTSM003362.1E-11147IPR000315B-box-type zinc finger
CDDcd000211.23E-5347No hitNo description
SMARTSM003362.4E-1162109IPR000315B-box-type zinc finger
PROSITE profilePS501199.54262109IPR000315B-box-type zinc finger
PfamPF006437.7E-664104IPR000315B-box-type zinc finger
CDDcd000213.71E-765109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKVQCDVCSA SAASIFCCAD EAALCGPCDR RVHRANKLAG KHRRFPLIHA AEPSSAAFSA  60
QKTKPLCDIC QERKGFFFCK EERSILCREC DVRVHTATEL MRRHSRFLLT DAHLSPAPVD  120
SLEEEEEEEE EEEENGSSSH SYSASDGSSI SEYLTKTLPG WHVEDFLVDA DIAAACSENG  180
LHDQVGSVPF IDSVLRPAFK HHLRSRRPGA TVICTHAPSL KGGGGQVQVD GLLEEACPAW  240
AAPGGQQVAL SDVAVTGDEG VSWVQCVPQM QVYADWTGSK RPRESPLCPY W*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12237A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976398.12e-83B-box zinc finger protein 20 isoform X2
TrEMBLA0A3L6Q0144e-87A0A3L6Q014_PANMI; B-box zinc finger protein 20-like isoform X2
STRINGPavir.Gb01186.1.p2e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.12e-37DBB family protein