PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12247A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 226aa    MW: 25048.1 Da    PI: 7.3049
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12247AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85.1e-2059112456
                                -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                +++ft+eq++ Le++F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Oropetium_20150105_12247A  59 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 112
                                458**************9899********************************9 PP
2HD-ZIP_I/II124.64.5e-4058150293
                HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                +krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aLk+++dal+++ e+L++e+
  Oropetium_20150105_12247A  58 RKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALKSKFDALHARVESLKQEK 141
                                8******************999************************************************************** PP

                HD-ZIP_I/II  85 eeLreelke 93 
                                 +L+ +l+e
  Oropetium_20150105_12247A 142 LALAVQLHE 150
                                ***999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.36E-1945116IPR009057Homeodomain-like
PROSITE profilePS5007117.47553114IPR001356Homeobox domain
SMARTSM003891.6E-1956118IPR001356Homeobox domain
CDDcd000861.86E-1758115No hitNo description
PfamPF000461.9E-1759112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-2060121IPR009057Homeodomain-like
PRINTSPR000315.2E-78594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000315.2E-794110IPR000047Helix-turn-helix motif
PfamPF021835.4E-13114155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDTPDHYQHH RFFMPPPLQQ PQPQQLCVPM MDERQPSFLV GRGGGAAGVG GGGGRGDRKR  60
RFTEEQIRSL ESMFHAHHAK LEPREKAELA RELGLQPRQV AIWFQNKRAR WRSKQLEHDY  120
AALKSKFDAL HARVESLKQE KLALAVQLHE MSERLRERDD RRGRTDGVAA TATASSSSCN  180
GGGEEDVDQD DDKANVLAGR VVDMDPPPEM SCVLGGSAPQ AGSYV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12247A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2244401e-110AY224440.1 Oryza sativa (japonica cultivar-group) isolate 22834 homeodomain leucine zipper protein-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976404.11e-91homeobox-leucine zipper protein HOX22
SwissprotQ01IK01e-64HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ51e-64HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A368RX293e-90A0A368RX29_SETIT; Uncharacterized protein
STRINGSi010550m8e-89(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-33homeobox 7